Journal: bioRxiv
Article Title: CXCL-CXCR2 signaling drives cancer-endothelium interactions in SCLC metastatic seeding
doi: 10.64898/2026.04.15.716394
Figure Lengend Snippet: a. Schematic of quantitative assessment of CXCR2 function in SCLC metastasis using Metastasis-Originated Barcode Sequencing (MOBA-seq). Cas9-expressing RP48 SCLC cells were randomly barcoded with a lentiviral sgRNA library containing one control sgRNA and three sgRNAs targeting Cxcr2 . Barcoded SCLC cells were subsequently transplanted intravenously into recipient mice, and metastatic tissues were harvested at multiple time points. Genomic DNA from metastatic lesions in target organs was subjected to barcode sequencing and analyzed using the MOBA-seq pipeline to quantify genotype-specific contributions to metastatic seeding and outgrowth. b. Cxcr2 inactivation suppresses SCLC metastasis across multiple tissues and time points. Metastatic colonies recovered from mouse brain, liver, and lung at four time points were plotted, with each dot representing an individual barcode-derived metastatic colony and dot size scaled to colony cell number. Across all organs and time points, Cxcr2 inactivation reduced the number of metastatic colonies compared with controls. Pre-transplantation barcode distributions showed similar cell numbers between the two genotypes. c. Cxcr2 inactivation suppresses SCLC metastatic burden across multiple tissues and time points. Metastatic burden in brain, liver, and lung was quantified via MOBA-seq at 2 days, 1 week, 2 weeks, and 3 weeks post-transplantation. For each tissue and time point, relative metastatic burden was plotted as fold change compared with the control sgRNA. Data points outlined in black denote comparisons with statistical significance (FDR < 0.05). Cxcr2 inactivation reduced metastatic burden in multiple organs, with the most pronounced suppression observed in the liver. d. Cxcr2 inactivation suppresses SCLC metastatic seeding across multiple tissues and time points. Relative metastatic seeding was quantified in brain, liver, and lung at 2 days, 1 week, 2 weeks, and 3 weeks post-transplantation. Fold changes in metastatic seeding were plotted relative to sg Ctrl . Data points outlined in black denote statistical significance (FDR < 0.05). Cxcr2 inactivation led to a marked reduction in the number of seeded metastatic colonies across all tissues and time points. e. MOBA-seq identifies dormant and expanding metastatic colonies across tissues. The distribution of log□-transformed metastatic colony sizes from liver, lung, and brain at the 3-week time point was modeled to identify two key features: a dormant peak mode (left mode, red) and a valley mode (right mode, blue) demarcating the transition from dormant to expanding colonies. These empirically derived cutoff values were uniformly applied across all three tissues to enable unbiased quantification of genotype-specific effects on metastatic dormancy. Notably, RP48 cells showed evidence of escaping dormancy only in the liver. f. Cxcr2 inactivation increases metastatic dormancy in the liver, but not lung, at 3 weeks. A Gaussian mixture model was applied to the log□-transformed metastatic colony size distributions from liver and lung, using the dormant-mode and valley-mode cutoffs defined in ( e ) to quantify genotype-specific dormancy in each organ. In the liver , Cxcr2 inactivation substantially increased the proportion of dormant colonies compared with control. In contrast, Cxcr2 inactivation led to a reduction in dormant colonies in the lung. g. Cxcr2 inactivation suppresses dissemination of metastatic SCLC cells into the blood. Shared barcodes detected in both liver metastases and circulating tumor cells were used to identify metastatic colonies capable of further dissemination (“SuperMets,” highlighted in red). Left : Jitter plots of colony sizes across time points show the frequency and distribution of SuperMet colonies for each genotype. Right : Size distributions of SuperMet versus regular metastatic colonies. Cxcr2 inactivation reduced the number of SuperMet colonies and increased the colony size threshold for dissemination. h. Schematic showing MOBA-seq comparison of the metastatic effects of CXCR2 and established metastatic drivers in human SCLC. Barcoded H82-Cas9 SCLC cells were transduced with a lentiviral sgRNA library containing a control sgRNA and sgRNAs targeting CXCR2 , CXCR4 , or NFIB . After intravenous transplantation of the barcoded pools into recipient mice, metastasis-bearing liver tissues were harvested for library preparation, sequencing, and analysis. MOBA-seq was performed to quantify genotype-specific metastatic fitness and evaluate the relative effect of CXCR2 compared with known metastatic drivers CXCR4 and NFIB . i. CXCR2 inactivation suppresses liver metastasis at 3 weeks, comparable to inactivation of other metastatic driver genes. Metastatic colonies recovered from liver at 3 weeks were plotted, with each dot representing a single barcode-derived colony and dot size scaled to colony cell number. Inactivation of CXCR2 , CXCR4 , or NFIB each resulted in a reduction in metastatic colony number relative to control. Pre-transplantation barcode distributions confirmed similar input cell numbers across all genotypes. j. CXCR2 inactivation suppresses metastatic burden as strongly as NFIB . Relative metastatic burden in the liver at 3 weeks was plotted as fold change compared with control sgRNA, with statistically significant differences (FDR < 0.05) shown in color. Both CXCR2 and NFIB inactivation resulted in significantly reduced metastatic burden. k. CXCR2 inactivation suppresses metastatic seeding more strongly than other metastatic driver genes. Relative metastatic seeding in the liver at 3 weeks was plotted as fold change compared with control sgRNA, with statistically significant differences (FDR < 0.05) shown in color. CXCR2 inactivation produced the greatest reduction in metastatic seeding, exceeding the effects observed with CXCR4 or NFIB inactivation. l. CXCR2 -dependent metastatic phenotypes are conserved between human and mouse SCLC cell lines. Radar plots summarizing liver metastatic metrics for Cxcr2 demonstrate similar suppression of metastatic burden, metastatic seeding, and dormancy escape in human H82 and mouse RP48 SCLC cell lines. Notably, inactivation of Cxcr2 in RP48 cells results in higher 90th-percentile colony sizes and peak mode values compared with H82 cells, indicating cell line-specific CXCR2 effects on clonal expansion dynamics. m. Schematic of quantification of CXCL chemokines as pro-metastatic factors in SCLC liver metastasis via MOBA-seq. Mice were treated by hydrodynamic injection (HDI) to deliver plasmids expressing either GFP alone (control) or GFP-tagged CXCL chemokines. 24 hours after HDI, barcoded SCLC cells were transplanted intravenously and metastases-bearing livers were harvested two weeks later. MOBA-seq was then performed to quantify the impact of CXCL overexpression on liver metastatic outgrowth. n. Hydrodynamic injection suppresses baseline SCLC liver metastasis. Left : Representative images of metastases-bearing mouse livers with and without HDI treatment show a marked reduction in H82 SCLC metastatic lesions in HDI-treated livers. Right : Quantification of metastasis-bearing liver weight per mouse demonstrates a significant decrease in metastatic burden following HDI treatment, presented as mean ± SD (N = 3 mice). o. Hydrodynamic injection efficiently transfects liver ECs. Flow cytometry analysis of GFP expression in liver CD31 + EC following HDI with either saline or CMV-GFP plasmid. HDI achieved robust transfection, with 35.9% of liver endothelial cells expressing GFP. p. CXCL overexpression restores SCLC metastatic seeding in HDI-treated mouse livers. Metastatic colonies recovered from HDI-treated mouse livers were plotted, with each dot representing an individual barcode-derived colony and dot size scaled to colony cell number. Overexpression of CXCL1, CXCL2, or CXCL3 increased the number of metastatic colonies relative to GFP control. q. CXCL1 and CXCL2 overexpression promote dormancy escape of SCLC metastasis. The log□□-transformed metastatic colony size distributions for GFP control and CXCL-overexpressing conditions were plotted. CXCL1- and CXCL2-overexpressing livers showed a shift toward expanding metastatic colonies compared with the predominantly dormant colony distribution observed in GFP control livers.
Article Snippet: HUVECs were cultured in Vascular Cell Basal Medium (ATCC, PCS-100-030) with Endothelial Cell Growth Kit (ATCC, PCS-100-041); All cell lines were confirmed to be mycoplasma negative (MycoAlert Detection Kit, Lonza).
Techniques: Sequencing, Expressing, Control, Derivative Assay, Transplantation Assay, Transformation Assay, Comparison, Transduction, Produced, Injection, Over Expression, Flow Cytometry, Saline, Plasmid Preparation, Transfection